horizon AND soil_horizon ?

[turbomam]

• https://genomicsstandardsconsortium.github.io/mixs/soil_horizon/
• https://genomicsstandardsconsortium.github.io/mixs/horizon/

[only1chunts]

to me this looks like a simple change of name accidentally let through when the soil package was created, the "soil_horizon" term should be changed to just "horizon" as it is the same MIXS ID and definition already.

Proposed action

Update soil package term name "soil_horizon" MIXSID:0001082 to "horizon" MIXSID:0001082

[mslarae13]

@only1chunts @ramonawalls @turbomam can we check in about this at the call in 04/16? And add it to the CIG agenda if needed?

[mslarae13]

We checked in about this on 04/16 (@only1chunts, @Woolly-at-EBI )

horizon and soil_horizon had the same ID.

To do

• change description to "soil horizon ENVO:03600030
  http://purl.obolibrary.org/obo/ENVO_03600030 A soil layer which is parallel to the soil surface and which has roughly homogenous physical, chemical and biological properties relative to the soil layers above or beneath it."

[mslarae13]

NCBI showed 0 use of horizon 19k use of soil_horizon 8k horizon_meth/method 0 soil horizon_meth

Resolved. horizon was removed. soil_horizon is available in soil & agriculture.

[turbomam]

Querying NMDC's Postgres version of NCBI Biosample, generated February 26 2024

Jasper also has a JSON/MongoDB solution

select
    harmonized_name,
    count(1)
from
    ncbi_attributes_all_long naal
where
    harmonized_name = 'horizon'
    or harmonized_name = 'horizon_meth'
    or harmonized_name = 'horizon_method'
    or harmonized_name = 'soil_horizon'
    or harmonized_name = 'soil_horizon_meth'
    or harmonized_name = 'soil_horizon_method'
group by
    harmonized_name;

---

|harmonized_name|count |
|---------------|------|
|horizon_meth   |8,646 |
|soil_horizon   |18,799|