Open turbomam opened 2 years ago
While the terms contributed by package submitters are vital to MIxS and very much appreciated, more discipline is required in the Value syntax
and Example
columns.
See esp. 'host scientific name' from the agriculture package
Environmental package | Structured comment name | Package item | Definition | Expected value | Value syntax | Example | Requirement | Preferred unit | Occurrence | MIXS ID | github ticket | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
agriculture | specific_host | host scientific name | Report the host's taxonomic name and/or NCBI taxonomy ID. | host scientific name, taxonomy ID | {text}|{NCBI taxid} | Homo sapiens and/or 9606 | M | 1 | MIXS:0000029 |
Value syntax
es are provided for machine validation."{something specific} or {text}" is equivalent to "{text}". The {something specific} applies no constraints to the Value syntax. Guidance like that should be put in another attribute of the MIxS term.