MIXS terms that need a proper label term - with suggested label terms

[Woolly-at-EBI]

Are are list of MIXS terms that need a proper label term and suggestion for what it could be: In ENA we use the label=title term for our term labels and what the user sees. The following suggestions are what we are implementing in ENA.

• [ ] host_family_relationship: host family relationship
• [ ] x_16s_recover_software: x 16s recovery software
• [ ] salinity_meth: salinity method
• [ ] Food_source: food source
• [ ] non_mineral_nutr_regm: non-mineral nutrient regimen
• [ ] previous_land_use_meth: previous land use method
• [ ] tot_car: total carbon
• [ ] samp_stor_temp: sample storage temperature
• [ ] microbial_biomass_meth: microbial biomass method
• [ ] single_cell_lysis_prot: single cell or viral particle lysis kit protocol
• [ ] tot_phos: total phosphate
• [ ] Food_Product_type: food product type
• [ ] host_infra_specific_name: host infra-specific name
• [ ] samp_stor_loc: sample storage location
• [ ] samp_stor_dur: sample storage duration
• [ ] sample_name: sample name
• [ ] single_cell_lysis_appr: single cell or viral particle lysis approach
• [ ] texture_meth: soil texture method
• [ ] sample_collec_method: sample collection method
• [ ] samp_collec_device: sample collection device
• [ ] samp_salinity: sample salinity
• [ ] tot_n_meth: total nitrogen method
• [ ] salinity_meth: salinity method
• [ ] x_16s_recover: x 16S recovered
• [ ] soil_text_measure: soil texture measurement
• [ ] samp_collec_method: sample collection method
• [ ] host_infra_specific_rank: host infra-specific rank

[ramonawalls]

Thanks, Peter! Very helpful.

[only1chunts]

I'm sure it will be obvious when I get it, but at the moment I'm not understanding what this ticket actually means? As far as I can tell all our terms have both a full name (Title in linkML speak) and a short name (AKA structured comment name or just "name" in LinkML speak) so what is the question/suggestion here? Lets take for example the first one in the list: host_family_relationship The full name is name: host family relationship and the short name is: host_fam_rel so where does "host_family_relationship" come from or suggested for?

[Woolly-at-EBI]

Thanks @only1chunts . You are perfectly correct. I am those closing this non-issue.

Apologies all, I should have double checked those on the web site. Like I did with spot check of definitions.

I had been using the JSON export from the linkml. The title for host_familyrelationship is correct in that JSON export. Ummm. I have code error somewhere. I don't understand as for most of the 700+ MIxS terms, it was pulling out the correct title. And in the JSON no titles have ""

[only1chunts]

@Woolly-at-EBI no worries, just glad I'm not missing something fundamental :-D