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GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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excel generation is slow #714

Closed turbomam closed 8 months ago

turbomam commented 11 months ago

Many steps are slow when we include all checklost/extension combinations in the schema, but the excel generation is probably the worst.

I am limiting the number of combinations with the --combo-environments and --combo-checklists flags on write-mixs-linkml in the project.Makefile

I think omitting any --combo-environments or --combo-checklists options constructs combination from all extensions

We should be able to generate sheets for all checklists, extensions and combinations in at most the 6 hours allocated for a GH action job. Preferably in less than an hour so that people can run it locally.

Note that a gen-excel step is included in the project.Makefile but is not included in make-all at this time

turbomam commented 11 months ago

see also

turbomam commented 9 months ago

may be faster now due to one-workbook per class. keep monitoring.