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GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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reduce length of short name of x16s_recover_software [MIXS:0000066] #742

Open only1chunts opened 6 months ago

only1chunts commented 6 months ago

Current term details

Term name -  16S recovery software  
Term ID - MIXS:0000066
Structured comment name - x16s_recover_software
Definition - Tools used for 16S rRNA gene extraction

Suggested update(s)

Term name -  16S recovery software  
Term ID - MIXS:0000066
Structured comment name - recover_software_amp
Definition - Tools used for amplicon region extraction from sequences

Additional context The addition of the preceding X made this term 21 char, the X was added for technical reasons to do with python and some other tools not liking term names starting with a number. The suggested name change here resolves the length and the starting with a number, it also follows the preference of GSC to use more generic terms were possible to allow greater inclusivity, i.e. its now not restricted to just 16S rRNA amplicons, it could be used for other amplicon sequencing experiments.

turbomam commented 5 months ago

or amp_recover_software, since we're trying to capture what software was used to recovery amplicons?

mslarae13 commented 6 days ago

@Woolly-at-EBI you said at the CIG call that you did a query of ENA and saw only 2% of submissions completed this field. Can you share what people are putting into this field?