How do different INSDC repos use different linkml slots to key MIxS terms?

[Woolly-at-EBI]

Describe the bug How do different INSDC repos use different linkml slots to key MIxS terms?

Additional context ENA uses the "long name"(=title) to key MIxS terms NCBI uses the "short name" to key MIxS terms

[cmungall]

Very interesting to see how MIxS put into practice!

What does it mean to key here specifically - I imagine it depends on the context. Viewing on NCBI/EBI sample pages exposes one way of doing it, creating a submission form another, downloading as XML another...?

On Tue, Feb 27, 2024 at 7:11 AM Peter Woollard @.***> wrote:

Describe the bug How do different INSDC repos use different linkml slots to key MIxS terms?

Additional context ENA uses the "long name"(=title) to key MIxS terms NCBI uses the "short name" to key MIxS terms

— Reply to this email directly, view it on GitHub https://github.com/GenomicsStandardsConsortium/mixs/issues/773, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAAMMOMREVAQH4E6FCAQMHTYVXZRRAVCNFSM6AAAAABD4JKZY6VHI2DSMVQWIX3LMV43ASLTON2WKOZSGE2TMOBUHA3DOMQ . You are receiving this because you are subscribed to this thread.Message ID: @.***>

[turbomam]

Thanks for the PR @sujaypatil96

@Woolly-at-EBI and @cmungall I don't feel like we've really finished this discussion. Should we open this issue back up or start another one?

[cmungall]

One actionable way to reformulate this is to have an SOP markdown doc for making changes. E.g "if a long name is to be changed then groups <X, Y> need to informed since this is used as a primary key in their relational database"...