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GenomicsStandardsConsortium / mixs

Minimum Information about any (X) Sequence” (MIxS) specification
https://w3id.org/mixs
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Some slots have non-standard names #814

Open turbomam opened 6 days ago

turbomam commented 6 days ago 
linkml-lint src/mixs/schema/mixs.yaml | grep "standard_naming" | grep -v "Permissible value"

warning Slot has name 'HACCP_term' (standard_naming) warning Slot has name 'IFSAC_category' (standard_naming) warning Slot has name 'air_PM_concen' (standard_naming) warning Slot has name 'ferm_pH' (standard_naming) warning Slot has name 'microb_start_taxID' (standard_naming) warning Slot has name 'soil_pH' (standard_naming) warning Slot has name 'spikein_AMR' (standard_naming) warning Slot has name 'water_pH' (standard_naming) warning Enum has name 'poorly_NAMED_ENUM' (standard_naming)

turbomam commented 6 days ago

For the record:

The slots/terms that are currently known as x16s_recover and x16s_recover_software had previously been named 16s_recover and 16s_recover_software. Those were non-standard names.

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