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Genomicus / bedtools

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bedtobam does not fail gracefully on bad input. #134

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Run bedtobam with a genome that is not a genome file
2. bedToBam -i foo.bed -g ../ > foo (this works) 
3. samtools view foo -segfaults with no warning 

What is the expected output? What do you see instead?
bedToBam should fail on bad input.  

What version of the product are you using? On what operating system?

bedToBam (v2.16.2)

Original issue reported on code.google.com by gabriel....@gmail.com on 17 Aug 2012 at 6:35