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Genomicus / bedtools

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closestBed returns more than one when the features overlapped. #136

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. closestBed -a feature1.bed -b feature2.bed -d > output.bed

What is the expected output? What do you see instead?
This is the part of the output.

B6  4899    4910    AP-1    0.910   -   B6  4752    4899    nucl4826    .   +   1
B6  4899    4910    AP-1    0.910   -   B6  4900    5047    nucl4974    .   +   0

I expected only the second line because the distance is smaller.

What version of the product are you using? On what operating system?

2.16.2-54-ged1e1f

Original issue reported on code.google.com by doo.y...@gmail.com on 21 Aug 2012 at 3:05

GoogleCodeExporter commented 9 years ago 
Yes, this looks like a regression.  Thanks for reporting it.

Original comment by aaronqui...@gmail.com on 23 Aug 2012 at 2:52

GoogleCodeExporter commented 9 years ago 
Sorry for the long delay, this is now fixed in the GitHub repository.  Thanks 
much for reporting this bug.

Original comment by aaronqui...@gmail.com on 22 Oct 2012 at 8:19