Closed weedcentipede closed 6 years ago
Hi,
Could-you send me your system configuration (OS, Python and Numpy version...) and your command line to see the origin of the issue ?
Bérengère
Error 1, toulligqc -f ./ReadsFused/readstobasecall/ -a ./ReadsPosApolo23ago2017/albacore_rebasecall/ -q ./ReadsPosApolo23ago2017/allnanopolish.fastq -o Essay1
Numpy version: 1.12.1 Python version: 3.6.2 OS: Ubuntu 16.04.3 LTS
Error 2, Numpy 1.12.1 (conda) and 1.13.1(pip) Python 3.6.1 OS Ubuntu 16.04.3 LTS toulligqc -n Essay1 -f ./FAST5/reads_ex_tmp/ -a ./albacore_basecalltmps/sequencing_summary.txt -o ./Output_Essay1
Thank you, Luis Alfonso
Hi, I recommend you to use Ubuntu 17.04, a virtualenv or the easiest solution: our Docker image (genomicpariscentre/toulligqc:latest) that works well as we use it for all our MinION runs. Try this command line : toulligqc -n Essay1 -f ./FAST5/reads_ex_tmp/ -a ./albacore_basecalltmps/sequencing_summary.txt -q ./ReadsPosApolo23ago2017/allnanopolish.fastq -o ./Output_Essay1
Best regards, Bérengère
Hi, That worked,
Thanks, Luis Alfonso.
Good afternoon, I'm setting this issue 'cause I have two running problems in two different computers: The first one is:
And the second is this one:
Trying to solve it, I've updated all the libraries, updated python, I removed and reinstalled the libraries and those problems still occur.
Do you know about what is happening? Is it something from the command line? or the python version? or is something from the libraries? Honestly, I don't know which is the problem? Could you help me please,
Thanks in advance. Luis Alfonso