Keyerror for a CNV - Githubissues

tsladecek commented 3 years ago

Hi,

I am trying to evaluate the following CNV (hg38): chr16 34963121 36048843 DUP

I ran the update_clingen.sh script and I am using the latest ClassifyCNV version (1.1.0)

However, the script crashes with this error message:

ClassifyCNV-1.1.0/ClassifyCNV.py Version 1.1.0
Traceback (most recent call last):
  File "ClassifyCNV-1.1.0/ClassifyCNV.py", line 817, in <module>
    dosage_sensitivity()
  File "ClassifyCNV-1.1.0/ClassifyCNV.py", line 657, in dosage_sensitivity
    assign_dup_points_s2(dosage_res_dup)
  File "ClassifyCNV-1.1.0/ClassifyCNV.py", line 462, in assign_dup_points_s2
    for gene in cnv_genes[cnv]:
KeyError: 'chr16_34963121_36048843_DUP'

Best, Tomas

tgurbich commented 3 years ago

Hi Tomas,

Thank you very much for reporting this. I fixed this bug and released version 1.1.1 which should no longer produce an error.

Best, Tatiana

tsladecek commented 3 years ago

Thank you for the quick response, it is working now :)

Genotek / ClassifyCNV

Keyerror for a CNV #5