Amplicon processing pipeline

Geo-omics / GLAMR_omics_pipelines

Multi-omics pipeline for the GLAMR database

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Open akiledal opened 4 months ago

akiledal commented 4 months ago

[ ] DADA2 wrapper script (@mhuang483 wrote; needs to be tested and implemented in snakemake)
[ ] Automate DADA2 truncation parameter selection
[ ] Identify gene and gene region, check if primer corresponds to metadata
[ ] Assign taxonomy