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GeoStat-Framework / GSTools

GSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more
https://geostat-framework.org
GNU Lesser General Public License v3.0
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The Herten aquifer example is not compatible with pandas version >= 0.25.0 #33

Closed LSchueler closed 4 years ago

LSchueler commented 5 years ago

Executing the script gstools/examples/08_variogram_estimation.py with pandas version >= 0.25.0 results in a pretty obscure error

File "pandas/_libs/parsers.pyx", line 534, in pandas._libs.parsers.TextReader.__cinit__ OverflowError: can't convert negative value to npy_uint64

The problem is in line 155 of the helper script gstools/examples/tools/vtk2gslib.py, which gets downloaded by the example script. header=-1 has to be changed to header=None.

@MuellerSeb could you contact Peter Beyer and ask him if it is possible to upload a corrected version? If that is not possible, maybe we have to do some meta programming and edit the source code.

MuellerSeb commented 5 years ago

Or maybe we use pyvista to read the vtk file?

LSchueler commented 5 years ago

I have actually never looked into the accompanying script... at least as long as it worked ;-)

I made a funny little fix with commit f9146584807, but yeah, pyvista is maybe a more sustainable solution.

MuellerSeb commented 4 years ago

With pyvista we could also have a plot of the original input data in 3D. That's the future. I tell you!

MuellerSeb commented 4 years ago

This example now uses pyvista.