Implementation of FVA - Githubissues

GeomScale / dingo

A python library for metabolic networks sampling and analysis

GNU Lesser General Public License v3.0

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Implementation of FVA #2

Closed TolisChal closed 3 years ago

TolisChal commented 3 years ago

This PR implements the FVA method to analyze a metabolic network.

It provides two functions: -- slow_fva which uses the function scipy.optimize.linprog to solve the linear programs required. -- fast_fva which uses the gurobi solver for the linear programs required.