GeomScale / dingo

A python library for metabolic networks sampling and analysis
GNU Lesser General Public License v3.0
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Load models #50

Closed hariszaf closed 1 year ago

hariszaf commented 1 year ago

This PR aims at adding the support of sbml models (.xml).

This is possible through the cobrapy library.

The same notion was used to edit the read_mat_file function of dingo, so no MATLAB related preprocess is needed, i.e. the matlab_model_wrapper.m script can be discarded.

Tests for all the 3 formats have been added, for the sampling feature too.