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GeomScale / dingo

A python library for metabolic networks sampling and analysis
GNU Lesser General Public License v3.0
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Error importing MetabolicNetwork class from dingo package in Google Colab (GSoC 2023) #60

Closed samadpls closed 1 year ago

samadpls commented 1 year ago

Describe the bug When running the cell provided in the README of the "https://github.com/GeomScale/dingo" project on Google Colab, an error message appears stating that the name 'MetabolicNetwork' cannot be imported from 'dingo' at an unknown location.

To Reproduce Steps to reproduce the behavior:

  1. Go to the following link: "https://colab.research.google.com/github/GeomScale/dingo/blob/develop/tutorials/dingo_tutorial.ipynb"
  2. Run all cells until the point where it is written "from dingo import MetabolicNetwork".

Expected behavior The code should be able to import the MetabolicNetwork class from the dingo package without any errors.

Screenshots N/A

Desktop (please complete the following information):

Additional context I am working on task 1 for applying to GSoC on this project and I need assistance in resolving this issue so that I can complete my task.

hariszaf commented 1 year ago

Hi @samadpls thanks for mentioning this.

Make sure of the Python version your colab notebook uses and edit the .path.append("/root/.local/lib/python3.7/site-packages/")) line accordingly.