Sampling on the flux space of multiple metabolic networks

[vissarion]

Proposed roadmap (from @hariszaf in https://github.com/GeomScale/dingo/pull/18):

• implement approach from cobra toolbox to build merged model
• sample by asking biomass of species A to be 0 and biomass of species B to be max
• sample with the vice versa conditions
• sample asking for both biomass functions to be max

[hariszaf]

Alternative way to model the community that might be better for our implementation: https://github.com/mathomics/ecosystem/blob/main/multiple_ecosystem.py This comes from a very recent study of Natalia E. Jiménez. They actually implement the RedCom approach of Koch et al. (2019); up to now no implementation was publicly available.

Another recent approach here

[vikasgrewal16]

is this issue still available ?