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Georgetown-IR-Lab / QuickUMLS

System for Medical Concept Extraction and Linking
MIT License
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Install problem #76

Open xiaoshuang0918 opened 2 years ago

xiaoshuang0918 commented 2 years ago

Describe the bug (base) F:\QuickUMLS-master>python setup.py install D:\Anaconda3\lib\site-packages\setuptools\dist.py:487: UserWarning: Normalizing '1.4.0r1' to '1.4.0.post1' warnings.warn(tmpl.format(**locals())) running install running bdist_egg running egg_info writing quickumls.egg-info\PKG-INFO writing dependency_links to quickumls.egg-info\dependency_links.txt writing requirements to quickumls.egg-info\requires.txt writing top-level names to quickumls.egg-info\top_level.txt reading manifest file 'quickumls.egg-info\SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'quickumls.egg-info\SOURCES.txt' installing library code to build\bdist.win-amd64\egg running install_lib running build_py creating build\bdist.win-amd64\egg creating build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\about.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\client.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\constants.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\core.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\install.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\network.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\server.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\spacy_component.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\toolbox.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls__init.py -> build\bdist.win-amd64\egg\quickumls byte-compiling build\bdist.win-amd64\egg\quickumls\about.py to about.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\client.py to client.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\constants.py to constants.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\core.py to core.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\install.py to install.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\network.py to network.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\server.py to server.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\spacy_component.py to spacy_component.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\toolbox.py to toolbox.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\init.py to init__.cpython-37.pyc creating build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\PKG-INFO -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\SOURCES.txt -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\dependency_links.txt -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\requires.txt -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\top_level.txt -> build\bdist.win-amd64\egg\EGG-INFO zip_safe flag not set; analyzing archive contents... creating 'dist\quickumls-1.4.0.post1-py3.7.egg' and adding 'build\bdist.win-amd64\egg' to it removing 'build\bdist.win-amd64\egg' (and everything under it) Processing quickumls-1.4.0.post1-py3.7.egg Removing d:\anaconda3\lib\site-packages\quickumls-1.4.0.post1-py3.7.egg error: [WinError 32] 另一个程序正在使用此文件，进程无法访问。: 'd:\anaconda3\lib\site-packages\quickumls-1.4.0.post1-py3.7.egg'

(base) F:\QuickUMLS-master>python setup.py install D:\Anaconda3\lib\site-packages\setuptools\dist.py:487: UserWarning: Normalizing '1.4.0r1' to '1.4.0.post1' warnings.warn(tmpl.format(**locals())) running install running bdist_egg running egg_info writing quickumls.egg-info\PKG-INFO writing dependency_links to quickumls.egg-info\dependency_links.txt writing requirements to quickumls.egg-info\requires.txt writing top-level names to quickumls.egg-info\top_level.txt reading manifest file 'quickumls.egg-info\SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'quickumls.egg-info\SOURCES.txt' installing library code to build\bdist.win-amd64\egg running install_lib running build_py creating build\bdist.win-amd64\egg creating build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\about.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\client.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\constants.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\core.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\install.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\network.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\server.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\spacy_component.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls\toolbox.py -> build\bdist.win-amd64\egg\quickumls copying build\lib\quickumls__init.py -> build\bdist.win-amd64\egg\quickumls byte-compiling build\bdist.win-amd64\egg\quickumls\about.py to about.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\client.py to client.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\constants.py to constants.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\core.py to core.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\install.py to install.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\network.py to network.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\server.py to server.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\spacy_component.py to spacy_component.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\toolbox.py to toolbox.cpython-37.pyc byte-compiling build\bdist.win-amd64\egg\quickumls\init.py to init__.cpython-37.pyc creating build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\PKG-INFO -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\SOURCES.txt -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\dependency_links.txt -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\requires.txt -> build\bdist.win-amd64\egg\EGG-INFO copying quickumls.egg-info\top_level.txt -> build\bdist.win-amd64\egg\EGG-INFO zip_safe flag not set; analyzing archive contents... creating 'dist\quickumls-1.4.0.post1-py3.7.egg' and adding 'build\bdist.win-amd64\egg' to it removing 'build\bdist.win-amd64\egg' (and everything under it) Processing quickumls-1.4.0.post1-py3.7.egg Removing d:\anaconda3\lib\site-packages\quickumls-1.4.0.post1-py3.7.egg Copying quickumls-1.4.0.post1-py3.7.egg to d:\anaconda3\lib\site-packages quickumls 1.4.0.post1 is already the active version in easy-install.pth

Installed d:\anaconda3\lib\site-packages\quickumls-1.4.0.post1-py3.7.egg Processing dependencies for quickumls==1.4.0.post1 Searching for quickumls_simstring>=1.1.5r1 Reading https://pypi.org/simple/quickumls_simstring/ Downloading https://files.pythonhosted.org/packages/0f/1b/3ff664369b713936a0f9282cbbd8ce7289f0b14d34971250a504485684a3/quickumls_simstring-1.1.5r1.tar.gz#sha256=e6c6d8ace730ef3d703e2e479694914e544762ee5d37e26536b95001b426666b Best match: quickumls-simstring 1.1.5.post1 Processing quickumls_simstring-1.1.5r1.tar.gz Writing C:\Users\CHENSH~1\AppData\Local\Temp\easy_install-ut_l5lm5\quickumls_simstring-1.1.5r1\setup.cfg Running quickumls_simstring-1.1.5r1\setup.py -q bdist_egg --dist-dir C:\Users\CHENSH~1\AppData\Local\Temp\easy_install-ut_l5lm5\quickumls_simstring-1.1.5r1\egg-dist-tmp-owfwhkss Traceback (most recent call last): File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 156, in save_modules yield saved File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 198, in setup_context yield File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 259, in run_setup _execfile(setup_script, ns) File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 46, in _execfile exec(code, globals, locals) File "C:\Users\CHENSH~1\AppData\Local\Temp\easy_install-ut_l5lm5\quickumls_simstring-1.1.5r1\setup.py", line 93, in UnicodeDecodeError: 'gbk' codec can't decode byte 0x9d in position 471: illegal multibyte sequence

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "setup.py", line 74, in setup_package() File "setup.py", line 69, in setup_package "Topic :: Scientific/Engineering :: Bio-Informatics", File "D:\Anaconda3\lib\site-packages\setuptools__init.py", line 153, in setup return distutils.core.setup(**attrs) File "D:\Anaconda3\lib\distutils\core.py", line 148, in setup dist.run_commands() File "D:\Anaconda3\lib\distutils\dist.py", line 966, in run_commands self.run_command(cmd) File "D:\Anaconda3\lib\distutils\dist.py", line 985, in run_command cmd_obj.run() File "D:\Anaconda3\lib\site-packages\setuptools\command\install.py", line 67, in run self.do_egg_install() File "D:\Anaconda3\lib\site-packages\setuptools\command\install.py", line 117, in do_egg_install cmd.run(show_deprecation=False) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 408, in run self.easy_install(spec, not self.no_deps) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 650, in easy_install return self.install_item(None, spec, tmpdir, deps, True) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 697, in install_item self.process_distribution(spec, dist, deps) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 745, in process_distribution [requirement], self.local_index, self.easy_install File "D:\Anaconda3\lib\site-packages\pkg_resources__init__.py", line 768, in resolve replace_conflicting=replace_conflicting File "D:\Anaconda3\lib\site-packages\pkg_resources__init.py", line 1051, in best_match return self.obtain(req, installer) File "D:\Anaconda3\lib\site-packages\pkg_resources\init__.py", line 1063, in obtain return installer(requirement) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 669, in easy_install return self.install_item(spec, dist.location, tmpdir, deps) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 695, in install_item dists = self.install_eggs(spec, download, tmpdir) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 890, in install_eggs return self.build_and_install(setup_script, setup_base) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 1162, in build_and_install self.run_setup(setup_script, setup_base, args) File "D:\Anaconda3\lib\site-packages\setuptools\command\easy_install.py", line 1146, in run_setup run_setup(setup_script, args) File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 262, in run_setup raise File "D:\Anaconda3\lib\contextlib.py", line 130, in exit__ self.gen.throw(type, value, traceback) File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 198, in setup_context yield File "D:\Anaconda3\lib\contextlib.py", line 130, in exit self.gen.throw(type, value, traceback) File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 169, in save_modules saved_exc.resume() File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 143, in resume raise exc.with_traceback(self._tb) File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 156, in save_modules yield saved File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 198, in setup_context yield File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 259, in run_setup _execfile(setup_script, ns) File "D:\Anaconda3\lib\site-packages\setuptools\sandbox.py", line 46, in _execfile exec(code, globals, locals) File "C:\Users\CHENSH~1\AppData\Local\Temp\easy_install-ut_l5lm5\quickumls_simstring-1.1.5r1\setup.py", line 93, in UnicodeDecodeError: 'gbk' codec can't decode byte 0x9d in position 471: illegal multibyte sequence

To Reproduce How to deal with the problem?

Environment