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Georgetown-IR-Lab / QuickUMLS

System for Medical Concept Extraction and Linking
MIT License
369 stars 95 forks source link

Installation Process Killed #95

Open skyrockets-21 opened 6 months ago

skyrockets-21 commented 6 months ago

Hi team,

Describe the bug I followed the installation instructions step 3: Create a QuickUMLS installation Initialize the system by running python -m quickumls.install . the command can be run but encountered the following error and the process was quitted:

"loading semantic types... done in 12.85 s 100,000 in 5.95 s (0.73%, 5.9e-05 s / term) 200,000 in 9.29 s (1.47%, 4.6e-05 s / term) 300,000 in 12.52 s (2.20%, 4.2e-05 s / term) ... 5,300,000 in 319.33 s (38.94%, 6.0e-05 s / term) 5,400,000 in 334.04 s (39.68%, 6.2e-05 s / term) 5,500,000 in 350.32 s (40.41%, 6.4e-05 s / term) Killed"

To Reproduce I used the following command: python -m quickumls.install /home/thomas/UMLS_EDA/umls-2023AB-metathesaurus-full/2023AB/META/ /home/thomas/quickumls/

Environment

Additional context

Thank you!