Find sfaira sample data (TNBC)

Using the sfaira library and following https://github.com/theislab/sfaira_tutorials/blob/master/tutorials/data_loaders.ipynb, I see no breast data:

import sfaira
import os

from collections import Counter

basedir = '/tmp/sfaira'
datadir = os.path.join(basedir, 'raw')
metadir = os.path.join(basedir, 'meta')
cachedir = os.path.join(basedir, 'cache')
ds = sfaira.data.Universe(data_path=datadir, meta_path=metadir, cache_path=cachedir)

c = Counter([tuple(x.split("_")[0:2]) for x in ds.ids])
print(c)

Counter({('homosapiens', 'brain'): 3,
         ('homosapiens', 'lungparenchyma'): 3,
         ('homosapiens', 'bronchus'): 1,
         ('homosapiens', 'lung'): 27,
         ('homosapiens', 'liver'): 3,
         ('homosapiens', 'kidney'): 3,
         ('homosapiens', 'blood'): 40,
         ('homosapiens', 'isletoflangerhans'): 1,
         ('homosapiens', 'testis'): 1,
         ('homosapiens', 'None'): 27,
         ('homosapiens', 'pancreas'): 2,
         ('homosapiens', 'neck'): 51,
         ('musmusculus', 'adiposetissue'): 5,
         ('musmusculus', 'urinarybladder'): 3,
         ('musmusculus', 'bonemarrow'): 6,
         ('musmusculus', 'brain'): 7,
         ('musmusculus', 'colon'): 2,
         ('musmusculus', 'diaphragm'): 1,
         ('musmusculus', 'heart'): 3,
         ('musmusculus', 'aorta'): 1,
         ('musmusculus', 'kidney'): 6,
         ('musmusculus', 'liver'): 5,
         ('musmusculus', 'lung'): 6,
         ('musmusculus', 'mammarygland'): 6,
         ('musmusculus', 'muscleorgan'): 2,
         ('musmusculus', 'pancreas'): 12,
         ('musmusculus', 'skinofbody'): 3,
         ('musmusculus', 'spleen'): 2,
         ('musmusculus', 'thymus'): 2,
         ('musmusculus', 'tongue'): 2,
         ('musmusculus', 'trachea'): 2,
         ('homosapiens', 'retina'): 3,
         ('homosapiens', 'colon'): 2,
         ('homosapiens', 'ileum'): 2,
         ('homosapiens', 'rectum'): 1,
         ('homosapiens', 'prostategland'): 1,
         ('homosapiens', 'bonemarrow'): 8,
         ('homosapiens', 'esophagus'): 1,
         ('homosapiens', 'spleen'): 1,
         ('homosapiens', 'placenta'): 2,
         ('homosapiens', 'colonicepithelium'): 1,
         ('homosapiens', 'laminapropriaofmucosaofcolon'): 2,
         ('homosapiens', 'caudatelobeofliver'): 1,
         ('musmusculus', 'None'): 1,
         ('homosapiens', 'thymus'): 1,
         ('musmusculus', 'ovary'): 3,
         ('musmusculus', 'intestine'): 1,
         ('musmusculus', 'testis'): 5,
         ('musmusculus', 'stomach'): 2,
         ('musmusculus', 'mesenchyme'): 2,
         ('musmusculus', 'skeletalmuscleorgan'): 3,
         ('musmusculus', 'vaultofskull'): 2,
         ('musmusculus', 'rib'): 3,
         ('musmusculus', 'blood'): 6,
         ('musmusculus', 'placenta'): 2,
         ('musmusculus', 'prostategland'): 2,
         ('musmusculus', 'smallintestine'): 4,
         ('musmusculus', 'trophoblast'): 1,
         ('musmusculus', 'uterus'): 2,
         ('homosapiens', 'lymphnode'): 4})

German-BioImaging / dtplatform

Find sfaira sample data (TNBC) #2