Test env for MPIEB

[CFGrote]

Plan for October 11

[CFGrote]

Mariana 1

• [ ] clone omero-ontop-mappings on our dev server

• [ ] clone omero-test-infra into omero-ontop-mappings

• [ ] add omero-py to requirements.txt

• [ ] port mapping:

  • [ ] OMERO_DB_PORT=(1)5432
  • [ ] OMERO_SERVER_TCP=4063 (14063)
  • [ ] OMERO_SERVER_SSL=4064 (14064)
  • [ ] OMERO_WEB_PORT=80 (14080)

    
    ports:

  • "${OMERO_WEB_PORT}:4080"

• [ ] install ontop (according to ontop tutorial)

• [ ] write the properties file

• [ ] start ontop endpoint

[CFGrote]

Carsten 1

• [x] configure omero user (follow omero docs)
• [x] create a project
• [x] create 3 datasets
• [x] inject images into datasets
• [x] annotate projects, datasets, and images with key-value pairs

[marimeireles]

• [x] clone omero-ontop-mappings on our dev server
• [x] clone omero-test-infra into omero-ontop-mappings
• [x] add omero-py to requirements.txt
  • through a script that can be reused in the docker (not through req.txt because there's none AFAIU)
• [x] OMERO_DB_PORT=(1)5432
• [x] OMERO_SERVER_TCP=4063 (14063)
• [x] OMERO_SERVER_SSL=4064 (14064)
• [x] OMERO_WEB_PORT=80 (14080) [ "${OMERO_WEB_PORT}:4080"]
  • also checked for whether all the variables in the docker (specifically the docker-compose.yml file) were defined somewhere and the answer is yes, they're all defined now
• [x] install ontop (according to ontop tutorial)
  • this was already done by carsten so im copying pasting it. edit: actly I did have to modify it a lil bit so there's an up to date version running on the server.
• [x] write the properties file
• [x] start ontop endpoint