Replace R DESeq2 script with Python alternative - Githubissues

GilbertLabUCSF / CanDI

CanDI - A global cancer data integrator

http://candi.rtfd.io/

MIT License

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Replace R DESeq2 script with Python alternative #39

Closed abearab closed 5 months ago

abearab commented 7 months ago

[x] remove run_deseq.r
[x] write DE analysis script using pyDESeq2
[ ] update example notebooks