Fix 150 - add ae_case_study

[mattroumaya]

Fix #150

To run Study_Report() in {gsm}:

# install fix-150 branch to test
devtools::install_github("Gilead-BioStats/clindata@fix-150")
devtools::load_all() # {gsm dev}

# -------------------------------------------------------------------------

# -- restart session load new version of {clindata} --

# -------------------------------------------------------------------------

devtools::load_all() # {gsm dev}

snapshot <- readRDS(system.file('ae_case_study', 'snapshots', "2023-05-09", "snapshot.rds", package = "clindata"))

augment <- Augment_Snapshot(lSnapshot = snapshot, cPath = system.file('ae_case_study', 'snapshots', package = "clindata"))

Study_Report(augment$lStudyAssessResults)

To run {grail}:

• Open {grail} project and then:

In terminal...

git fetch
git checkout ae-case-study-demo

In R...

devtools::install_github("Gilead-BioStats/clindata@fix-150")

### restart R session ###

devtools::load_all(); GrailApp(strStudyPath = system.file('ae_case_study', 'snapshots', package = "clindata"))

Some bugs/undesired effects:

• Probably need to add a triage.csv file for the most recent date
• The dates go from 2010 >> 2023 - we probably want to modify
• The locks are not green or red and have some 'NA' info in the hovertext. Will definitely be able to fix this but just wanted to get a version up and running first.