QC: Fully document dfGroups data mode in wiki/vignette

[jwildfire]

QC Details

Specify which Params are expected for each GroupLevel in dfGroups

Additional Comments

[jwildfire]

Study Params with nice labels in Report_StudyInfo

lStudyLabels <- list(
      StudyID = "Unique Study ID",
      protocol_title = "Protocol title",
      nickname = "Protocol nickname",
      site_summary = "Sites (Enrolled / Planned)",
      participant_summary = "Participants (Enrolled / Planned)",
      status = "Study Status",
      product = "Product",
      phase = "Phase",
      therapeutic_area = "Therapeutic Area",
      protocol_indication = "Indication",
      protocol_type = "Protocol type",
      protocol_row_id = "Protocol row ID",
      protocol_product_number = "Protocol product number",
      est_fpfv = "First-patient first visit date (CTMS)",
      est_lpfv = "Last-patient first visit date (CTMS)",
      est_lplv = "Last-patient last visit date (CTMS)"
    )
  }

Summary Derivations:

 lStudy$site_summary <- glue("{round(as.numeric(lStudy$enrolled_sites))}  / {round(as.numeric(lStudy$planned_sites)} )")
  lStudy$participant_summary <- glue("{round(as.numeric(lStudy$enrolled_participants))}  / {round(as.numeric(lStudy$planned_participants)} )")

[lauramaxwell]

@jwildfire as I'm working on this, I see some discrepancy between the dfGroups output from the data-reporting.yaml and what is expected(?) in ReportStudyInfo according to this list. Is this list intended to just be a list of common params? Are any required?

Also, participant_summary and site_summary are not created anywhere in the reporting pipeline as far as i can see. Should I add them to Report_Setup.R if the necessary columns exist in the dfGroups data?

[lauramaxwell]

remove most of lStudyLabels defaults (keep SiteCount, ParticipantCount and Status) and add that mapping to {rbmPipe} in some post {gsm} v2 work. This is too gilda specific at the moment, so moving this out of the open source package makes sense. As such, the params documentation in DataPipeline.Rmd will be limited to these basic params.