Compute_CCI doesn't work

[2959493126]

CCI <- Compute_CCI( data = gene_expr, Label = Label, cell_group = cell_group, LR_pairs_DB = LR_pairs_DB, TF_reg_DB = TF_reg_DB, R_TF_association = R_TF_association, LR_db = LR_db, N_cores = 2, DEmethod = "wilcoxon", n_bootstrap = 4, backend = "doParallel", other_inter_scores = NULL, cell_reference = NULL, Org = Org, use.type = "median", probs = 0.9, method = "weighted" Analyzing intracellular communications... **** Compute TF activity

• Identify realiable target genes 6.39 sec elapsed
• Identify differentially expressed target genes ... using 2 cores with doParallelSNOW ... Error in { : task 1 failed - "cannot open the connection"

[Ginnay]

Thanks, we have improved this part. You can reinstall the DcjComm package (devtools::install_github("Ginnay/DcjComm")) and re-run this part of your code.