search

Ginnay / DcjComm

Cell clustering and communication network inference for single-cell transcriptomics
GNU General Public License v3.0
5 stars 0 forks source link

Running CCI function error #3

Open jiazim opened 2 days ago

jiazim commented 2 days ago

When running the Compute_CCI function, an errors occur: Error in { : task 1 failed - "cannot open the connection".

Analyzing intracellular communications... **** Compute TF activity

Otherwise, there is some mistakes in the Example.R, in which the generation of gene_input goes wrong though using the annationed codes. Specifically, the step: "# Select marker genes by Seurat" has some problem.

Hope to your reply. Thanks!

Ginnay commented 2 days ago

Thanks, we have improved this part. You can reinstall the DcjComm package (devtools::install_github("Ginnay/DcjComm")) and re-run this part of your code.