Issue with the Compute_CCI Function

Ginnay / DcjComm

Cell clustering and communication network inference for single-cell transcriptomics

GNU General Public License v3.0

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Open wangbenwang123 opened 1 month ago

wangbenwang123 commented 1 month ago

In part of the Compute_CCI function, the following code appears:

gene_expr <- as.data.frame(gene_expr)

However, in the function's parameters, there is no gene_expr, only data.

Compute_CCI(
  data = data,
)

Additionally, does the data input always need to be in TPM format? Are there any optimized methods for handling counts instead?

wangbenwang123 commented 1 month ago

and a new error In file(filename, "r", encoding = encoding) : cannot open file 'Pvalue_target_genes_all_cluster.R': No such file or directory