GiulioRossetti / RDyn

RDyn: graph benchmark handling community dynamics
doi:10.1093/comnet/cnx016
21 stars 7 forks source link

Update networkx to 2.8.4 #169

Closed pyup-bot closed 2 years ago

pyup-bot commented 2 years ago

This PR updates networkx from 2.3 to 2.8.4.

Changelog ### 2.8.4 ``` What's Changed * Clean up maximal_independent_set tests by MridulS in https://github.com/networkx/networkx/pull/5567 * MAINT: Cleanup centrality module, remove unused variables by MridulS in https://github.com/networkx/networkx/pull/5308 * importorskip scipy instead of numpy for total spanning tree by MridulS in https://github.com/networkx/networkx/pull/5693 * Add initial_graph parameter to scale_free_graph and deprecate create_using by rossbar in https://github.com/networkx/networkx/pull/5697 * Add docstring example for attr transfer to linegraph. by rossbar in https://github.com/networkx/networkx/pull/5698 * Update ISMAGS.analyze_symmetry docstring. by rossbar in https://github.com/networkx/networkx/pull/5696 * Add default value p=2 for minkowski distance metric. by rossbar in https://github.com/networkx/networkx/pull/5700 * Use inline math by szhorvat in https://github.com/networkx/networkx/pull/5701 * Update multigraph docstrings to reflect `remove_edges_from` behavior. by rossbar in https://github.com/networkx/networkx/pull/5699 * Update simple_cycles docstring w/ yields and examples by rossbar in https://github.com/networkx/networkx/pull/5709 * Chromatic polynomial by lucasmccabe in https://github.com/networkx/networkx/pull/5675 * Catch ':' explicitly while working with pydot by MridulS in https://github.com/networkx/networkx/pull/5710 * Revert "Add workaround for pytest failures on 3.11b2" by rossbar in https://github.com/networkx/networkx/pull/5717 * Default to lightmode for documentation by rossbar in https://github.com/networkx/networkx/pull/5715 * Dont compute all biconnected components in `is_biconnected()` by matusvalo in https://github.com/networkx/networkx/pull/5688 * Some more changes to make pytest-randomly happy by MridulS in https://github.com/networkx/networkx/pull/5719 * Add durations flag to coverage run on CI. by rossbar in https://github.com/networkx/networkx/pull/5718 * Recover order of layers in multipartite_layout when layers are sortable by rossbar in https://github.com/networkx/networkx/pull/5705 * Update doc requirements by jarrodmillman in https://github.com/networkx/networkx/pull/5711 * Touchups to MG and MDG edges docstrings. by rossbar in https://github.com/networkx/networkx/pull/5708 * Add PendingDeprecation for pydot by jarrodmillman in https://github.com/networkx/networkx/pull/5721 * Add example of topo_order kwarg to dag_longest_path by rossbar in https://github.com/networkx/networkx/pull/5728 * CI: add pytest-randomly workflow. by rossbar in https://github.com/networkx/networkx/pull/4553 New Contributors * szhorvat made their first contribution in https://github.com/networkx/networkx/pull/5701 **Full Changelog**: https://github.com/networkx/networkx/compare/networkx-2.8.3...networkx-2.8.4 ``` ### 2.8.3 ``` What's Changed * added example to closeness.py by Lukong123 in https://github.com/networkx/networkx/pull/5645 * Extract valid kwds from the function signature for draw_networkx_* by MridulS in https://github.com/networkx/networkx/pull/5660 * Error out when pydot fails to correctly parse node names by MridulS in https://github.com/networkx/networkx/pull/5667 * Remove redundant py2 numeric conversions - Take 2 by MridulS in https://github.com/networkx/networkx/pull/5661 * Correcting a typo in the references by RATCOinc in https://github.com/networkx/networkx/pull/5677 * Add workaround for pytest failures on 3.11b2 by rossbar in https://github.com/networkx/networkx/pull/5680 * Moved random_spanning_tree to public API by mjschwenne in https://github.com/networkx/networkx/pull/5656 * More tests for clustering (upstreaming from graphblas-algorithms) by eriknw in https://github.com/networkx/networkx/pull/5673 * Remove unused logic in nonisomorphic_trees by Erotemic in https://github.com/networkx/networkx/pull/5682 * equitable_coloring: Get lazily first item instead of creating whole list by matusvalo in https://github.com/networkx/networkx/pull/5668 * Update subgraph views tests to pass with out of order execution by MridulS in https://github.com/networkx/networkx/pull/5683 * Use isort with pre-commit to enforce import guidelines by MridulS in https://github.com/networkx/networkx/pull/5659 * ignore isort commit from git blame by MridulS in https://github.com/networkx/networkx/pull/5684 * Another catch by pytest-randomly by MridulS in https://github.com/networkx/networkx/pull/5685 * Remove unused file from utils.test by MridulS in https://github.com/networkx/networkx/pull/5687 * Update release requirements by jarrodmillman in https://github.com/networkx/networkx/pull/5690 * Update developer requirements by jarrodmillman in https://github.com/networkx/networkx/pull/5689 New Contributors * RATCOinc made their first contribution in https://github.com/networkx/networkx/pull/5677 * eriknw made their first contribution in https://github.com/networkx/networkx/pull/5673 * matusvalo made their first contribution in https://github.com/networkx/networkx/pull/5668 **Full Changelog**: https://github.com/networkx/networkx/compare/networkx-2.8.2...networkx-2.8.3 ```
Links - PyPI: https://pypi.org/project/networkx - Changelog: https://pyup.io/changelogs/networkx/ - Homepage: https://networkx.org/
pyup-bot commented 2 years ago

Closing this in favor of #170