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Gladfelter-Lab / condensate-analysis

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Difficulty making new custom feature in featurize #1

Open sierrajc598 opened 1 month ago

sierrajc598 commented 1 month ago

Tried to make a new custom feature in featurize.py however the code had issues reading the custom features. To bypass this, I had to modify the code to look like the file added. featurize_edit.txt

crockeraw commented 1 month ago

It looks like you added the following custom function:

def centroid_info(mask, img):
    point = ndimage.center_of_mass(mask)
    round_point = [ int(round(elem, 0)) for elem in point ]
    if len(round_point) == 2 : 
        intensity = int(img[round_point[0], round_point[1]])
    elif len(round_point) == 3:
        intensity = int(img[round_point[0], round_point[1], round_point[2]])
    return intensity

Is it working as is? I'm not clear on what the problem is. Could you provide an example (screenshot or copy-paste) of what you are trying to do and what error you are encountering?