Open brcopeland opened 2 years ago
For example as per https://gatk.broadinstitute.org/hc/en-us/articles/360035531112--How-to-Filter-variants-either-with-VQSR-or-by-hard-filtering, it can be necessary to reduce the --max-gaussians parameter. Even doing that, small numbers of variants can cause the step to fail entirely. One possible solution is that VQSR could be run only if the total size of the inputs is sufficiently large.
--max-gaussians
For example as per https://gatk.broadinstitute.org/hc/en-us/articles/360035531112--How-to-Filter-variants-either-with-VQSR-or-by-hard-filtering, it can be necessary to reduce the
--max-gaussiansparameter. Even doing that, small numbers of variants can cause the step to fail entirely. One possible solution is that VQSR could be run only if the total size of the inputs is sufficiently large.