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Gleeson-Lab / wxs_pipeline

Starting with BAMs and FASTQs, follow GATK 4.0 Best Practices up to generating a joint-genotyped VCF
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bed file as an input in Amplicon mode #16

Closed chchuk closed 2 years ago

chchuk commented 2 years ago

We can use bed file as an input of alignment pipeline because we don't need to use all reference genome in case of targeted amplicon sequencing