GNRD is grabbing extra words after a taxon name

[diatomsRcool]

GNRD is finding a correct taxon name, but grabbing a following word that it shouldn't. Words like "clade", "complex", and "genome" are very common

data package ID	name	error type	text string	notes
497	X. tropicalis genome	false positive		should  not have grabbed "genome"
1218	Giardia lamblia genome	false positive		should  not have grabbed "genome"
422	Marmota clade	false positive		should  not have grabbed the "clade"
743	Cymbella ventricosa	false positive		should have grabbed the /turgida too, maybe
956	foraminifera	false negative		should have grabbed this and not "benthic foraminifera"
274	Gasteracantha clade	false positive	Gasteracantha clade as sister	should not have captured "clade"
313	T. hudsonicus clade	false positive		should not have captured "clade"
252	R. antirrhini complex	false positive		should not have captured "complex"
333	C. maculata complex	false positive		should not have captured "complex"
333	C. striata complex	false positive		should not have captured "complex"
333	C. striata plex	false positive		should not have captured "complex", which was on line break
307	Glossina distribution	false positive	surveys of Glossina distribution to monitor	should not have captured "distribution"
225	A. aspera eastern	false positive	of the A. aspera eastern Caribbean data set	should not have captured "eastern"
313	T. hudsonicus genotype	false positive		should not have captured "genotype"
317	Ndundulu haplotype	false positive		should not have captured "haplotype"
317	Ndundulu kipunji haplotype	false positive		should not have captured "haplotype"
252	R. antirrhini lineages	false positive	associated R. antirrhini lineages,	should not have captured "lineages"
313	Tamiasciurus lineages	false positive		should not have captured "lineages"
268	Anolis may	false positive	ecology of Anolis may represent	should not have captured "map"
313	Tamiasciurus may	false positive	Tamiasciurus may lead	should not have captured "may"
323	T. truncatus may	false positive		should not have captured "may"
329	H. gardneri may	false positive	in H. gardneri may arise	should not have captured "may"
333	C. striata may	false positive		should not have captured "may"
252	L. vulgaris origin	false positive		should not have captured "origin"
317	Rungwecebus specimen	false positive		should not have captured "specimen"
307	G. palpalis subspecies	false positive	uncharacterized G. palpalis subspecies	should not have captured "subspecies"
252	Linaria taxa	false positive		should not have captured "taxa"
313	T. hudsonicus used	false positive		should not have captured "used"
946	X. clivii after	false positive		should not have grabbed "after
1326	Acanthopagrus schlegeli after	false positive		should not have grabbed "after" - related to false negative
422	Alaskan broweri	false positive		should not have grabbed "Alaskan"
1359	O. tuberosa alliance	false positive		should not have grabbed "alliance"
422	American broweri	false positive		should not have grabbed "American"
422	Asiatic camtschatica	false positive		should not have grabbed "Asiatic"
422	Both caudata	false positive		should not have grabbed "both"
684	N. multifasciatus candidate	false positive		should not have grabbed "candidate"
1158	S. glynni change	false positive		should not have grabbed "change"
432	Caenorhabditis clade	false positive		should not have grabbed "clade"
432	Rhabditis clade	false positive		should not have grabbed "clade"
684	L. lemairii clade	false positive		should not have grabbed "clade"
684	L. callipterus clade	false positive		should not have grabbed "clade"
825	D. simulans clade	false positive		should not have grabbed "clade"
1044	C. ohridella clade	false positive		should not have grabbed "clade"
1359	O. acetosella clade	false positive		should not have grabbed "clade"
1359	O. rosea clade	false positive		should not have grabbed "clade"
1523	K. septemlobus clade	false positive	Within the K. septemlobus clade, the haplotypes	should not have grabbed "clade"
457	Trichoptera clades	false positive		should not have grabbed "clades"
505	C. ignobilis clades	false positive		should not have grabbed "clades"
505	C. melampygus clades	false positive		should not have grabbed "clades"
684	L. callipterus clades	false positive		should not have grabbed "clades"
684	Eretmodus clades	false positive		should not have grabbed "clades"
765	Afrotheria clades	false positive		should not have grabbed "clades"
1005	Neotropical clades	false positive		should not have grabbed "clades"
1044	Phyllonorycter clades	false positive		should not have grabbed "clades"
1359	Oxalis clades	false positive		should not have grabbed "clades"
726	Aedes taeniorhynchus collection	false positive		should not have grabbed "collection"
1027	Boechera stricta collection	false positive		should not have grabbed "collection"
448	P. hylocetes complex	false positive		should not have grabbed "complex"
448	A. tigrinum complex	false positive		should not have grabbed "complex"
448	Ambystoma tigrinum complex	false positive		should not have grabbed "complex"
835	I. batatas complex	false positive		should not have grabbed "complex"
966	Drosophila serrata complex	false positive		should not have grabbed "complex"
1048	Burkholderia cepacia complex	false positive		should not have grabbed "complex"
1048	B. cepacia complex	false positive		should not have grabbed "complex"
1310	Paxillus involutus complex	false positive		should not have grabbed "complex"
1469	Lycaeides complex	false positive		should not have grabbed "complex"
1519	A. tumefaciens confer	false positive	A. tumefaciens confer the ability to	should not have grabbed "confer"
1292	Acropora coral larvae	false positive		should not have grabbed "coral larvae"
366	Mytilus data	false positive		should not have grabbed "data"
448	P. aztecus data	false positive		should not have grabbed "data"
1158	Pocillopora data	false positive		should not have grabbed "data"
1293	S. pelliserpentis data	false positive		should not have grabbed "data"
1349	D. ferruginea data	false positive	fit the D. ferruginea data equally well	should not have grabbed "data"
684	N. fasciatus distribution	false positive		should not have grabbed "distribution"
972	G. clavigera distribution	false positive		should not have grabbed "distribution"
1414	Neotyphodium occultans endophyte	false positive		should not have grabbed "endophyte"
340	Arthroleptis expanded	false positive	that Arthroleptis expanded out of	should not have grabbed "expanded"
454	S. jarrovii form eight	false positive	S. jarrovii form eight basal clades	should not have grabbed "form eight"
634	R. amarus form host-specific	false positive		should not have grabbed "form host-specific"
1414	Neotyphodium fungi	false positive		should not have grabbed "fungi"
415	Drosophila genes	false positive		should not have grabbed "genes"
432	C. elegans genes	false positive		should not have grabbed "genes"
917	Oxphos genes	false positive		should not have grabbed "genes"
1441	L. cerasina genes	false positive		should not have grabbed "genes"
505	C. ignobilis genetic	false positive		should not have grabbed "genetic"
520	Y. pestis genetic	false positive		should not have grabbed "genetic"
825	D. mauritiana genetic	false positive		should not have grabbed "genetic"
825	D. sechellia genetic	false positive		should not have grabbed "genetic"
929	S. cerevisiae genetic	false positive		should not have grabbed "genetic"
929	S. paradoxus genetic	false positive		should not have grabbed "genetic"
1027	Boechera genetic	false positive		should not have grabbed "genetic"
1048	Z. mays genetic	false positive		should not have grabbed "genetic"
1093	Sorex genetic	false positive		should not have grabbed "genetic"
1310	L. amethystina genetic	false positive		should not have grabbed "genetic"
481	D. mojavensis genome	false positive		should not have grabbed "genome"
520	R. norvegicus genome	false positive		should not have grabbed "genome"
733	S. vulgaris genome	false positive		should not have grabbed "genome"
733	A. thaliana genome	false positive		should not have grabbed "genome"
825	D. sechellia genome	false positive		should not have grabbed "genome"
1234	B. mori genome	false positive		should not have grabbed "genome"
1158	S. glynni genotype	false positive		should not have grabbed "genotype"
1158	Symbiodinium genotype	false positive		should not have grabbed "genotype"
505	Caranx hybrids	false positive		should not have grabbed "hybrids"
505	C. melampygus hybrids	false positive		should not have grabbed "hybrids"
733	Senecio hybrids	false positive		should not have grabbed "hybrids"
733	Spartina hybrids	false positive		should not have grabbed "hybrids"
972	Pinus banksiana hybrids	false positive		should not have grabbed "hybrids"
972	P. banksiana hybrids	false positive		should not have grabbed "hybrids"
1005	C. porosus hybrids	false positive		should not have grabbed "hybrids"
1060	Boechera hybrids	false positive		should not have grabbed "hybrids"
1414	N. occultans hyphae	false positive		should not have grabbed "hyphae"
710	S. cerevisiae isolates	false positive		should not have grabbed "isolates"
929	S. cerevisiae isolates	false positive		should not have grabbed "isolates"
1234	B. mori larva	false positive		should not have grabbed "larva"
457	Annulipalpian larvae	false positive		should not have grabbed "larvae"
457	Integripalpian larvae	false positive		should not have grabbed "larvae"
457	Spicipalpian larvae	false positive		should not have grabbed "larvae"
1207	Drosophila melanogaster larvae	false positive		should not have grabbed "larvae"
1292	A. millepora larvae	false positive		should not have grabbed "larvae"
1316	Drosophila melanogaster larvae	false positive		should not have grabbed "larvae"
1457	H. erythrogramma larvae	false positive	H. erythrogramma larvae develop	should not have grabbed "larvae"
422	Petromarmota lineage	false positive		should not have grabbed "lineage"
432	Caenorhabditis lineage	false positive		should not have grabbed "lineage"
536	Aphelocoma lineage	false positive		should not have grabbed "lineage"
684	L. callipterus lineage	false positive		should not have grabbed "lineage"
972	G. clavigera lineage	false positive		should not have grabbed "lineage"
972	Grosmannia clavigera lineage	false positive		should not have grabbed "lineage"
536	Aphelocoma lineages plus	false positive		should not have grabbed "lineages plus"
405	Trabeculus lineages	false positive		should not have grabbed "lineages"
536	Aphelocoma lineages	false positive		should not have grabbed "lineages"
684	L. callipterus lineages	false positive		should not have grabbed "lineages"
884	Pogonomyrmex lineages	false positive		should not have grabbed "lineages"
999	P. antipodarum lineages	false positive		should not have grabbed "lineages"
1060	Boechera lineages	false positive		should not have grabbed "lineages"
1332	Rhinella margaritifera lineages	false positive		should not have grabbed "lineages"
1332	Al. femoralis lineages	false positive		should not have grabbed "lineages"
1332	Ad. heyeri lineages	false positive		should not have grabbed "lineages"
1359	Oxalis lineages	false positive		should not have grabbed "lineages"
1519	A. tumefaciens lineages	false positive	A. tumefaciens lineages compete for a	should not have grabbed "lineages"
946	X. largeni loci	false positive		should not have grabbed "loci"
366	M. edulis locus	false positive	for any M edulis locus studied	should not have grabbed "locus"
825	D. sechellia mate	false positive		should not have grabbed "mate"
340	A. sylvaticus may	false positive	While A. sylvaticus may comprise	should not have grabbed "may"
340	Arthroleptis may	false positive	within Arthroleptis may aid	should not have grabbed "may"
356	N. yunnanensis may	false positive	that N. yunnanensis may be a specie complex	should not have grabbed "may"
405	Procellaria westlandica may	false positive		should not have grabbed "may"
405	Pu. huttoni may	false positive		should not have grabbed "may"
422	Petromarmota may	false positive		should not have grabbed "may"
432	C. elegans may	false positive		should not have grabbed "may"
481	D. mojavensis may	false positive		should not have grabbed "may"
505	C. melampygus may	false positive		should not have grabbed "may"
726	A. taeniorhynchus may	false positive		should not have grabbed "may"
923	Neofelis may	false positive		should not have grabbed "may"
929	S. cerevisiae may	false positive		should not have grabbed "may"
1005	Crocodylus may	false positive		should not have grabbed "may"
1005	C. porosus may	false positive		should not have grabbed "may"
1070	Aphelocoma californica may	false positive		should not have grabbed "may"
1070	A. alexandri may	false positive		should not have grabbed "may"
1070	P. edulis may	false positive		should not have grabbed "may"
1234	B. mori may	false positive		should not have grabbed "may"
1310	L. amethystina may	false positive		should not have grabbed "may"
1371	M. arion may	false positive		should not have grabbed "may"
1398	S. alterniflora may	false positive		should not have grabbed "may"
1441	Laupala may	false positive	across Laupala may have	should not have grabbed "may"
1457	H. erythrogramma may	false positive		should not have grabbed "may"
1158	Symbiodinium may	false positive		should not have grabbed "may"- related to false negative?
1087	Rhizoglyphus means	false positive		should not have grabbed "means"
1191	Varroa mite	false positive		should not have grabbed "mite"
1076	M. strigosum origin	false positive		should not have grabbed "origin"
422	Perhaps broweri	false positive		should not have grabbed "Perhaps"
457	Wormaldia plus	false positive		should not have grabbed "plus"
700	M. huetii plus	false positive		should not have grabbed "plus"
1109	Salmo trutta pose	false positive		should not have grabbed "pose"
383	Macroscelides proboscideus sequence	false positive		should not have grabbed "sequence"
422	Marmota sequence	false positive		should not have grabbed "sequence"
438	Scaptomyza sequence	false positive		should not have grabbed "sequence"
487	Tenebrio molitor sequence	false positive		should not have grabbed "sequence"
743	Sellaphora sequence	false positive		should not have grabbed "sequence"
1480	Ap. longa sequence	false positive	an Ap. longa sequence in public	should not have grabbed "sequence"
1441	L. eukolea sire	false positive		should not have grabbed "sire"
1441	L. cerasina sire	false positive		should not have grabbed "sire"
634	A. cygnea site	false positive		should not have grabbed "site"
1332	R. dapsilis specimen	false positive		should not have grabbed "specimen"
432	C. elegans strain	false positive		should not have grabbed "strain"
432	C. briggsae strain	false positive		should not have grabbed "strain"
497	X. tropicalis strain	false positive		should not have grabbed "strain"
798	H. armigera strain	false positive		should not have grabbed "strain"
929	S. cerevisiae strain	false positive		should not have grabbed "strain"
929	S. paradoxus strain	false positive		should not have grabbed "strain"
1519	A. tumefaciens strain	false positive	A. tumefaciens strain 15955	should not have grabbed "strain"
1519	Agrobacterium tumefaciens strain	false positive	Agrobacterium tumefaciens strain 15955	should not have grabbed "strain"
514	Peromyscus studies	false positive		should not have grabbed "studies"
1457	Heliocidaris subspecies	false positive		should not have grabbed "subspecies"
1457	H. erythrogramma subspecies	false positive		should not have grabbed "subspecies"
438	Antopocerus taxa	false positive		should not have grabbed "taxa"
536	Aphelocoma taxa	false positive		should not have grabbed "taxa"
612	Vitis taxa	false positive		should not have grabbed "taxa"
1076	Melampodium taxa	false positive		should not have grabbed "taxa"
743	Aulacoseira sequence types	false positive		should not have grabbed "types"
464	Drosophila melanogaster used	false positive		should not have grabbed "used"
481	D. mojavensis used	false positive		should not have grabbed "used"
497	X. tropicalis used	false positive		should not have grabbed "used"
684	Cytb genes used	false positive		should not have grabbed "used"
1005	C. novaeguineae used	false positive		should not have grabbed "used"
1228	R. sylvatica used	false positive		should not have grabbed "used"
1044	Cameraria versus	false positive		should not have grabbed "versus"
1044	Cameraria ohridella versus	false positive		should not have grabbed "versus"
1076	M. nayaritense versus	false positive		should not have grabbed "versus"
1463	Lerista bougainvilli via	false positive		should not have grabbed "via" - table and line break problem
933	T. grallator volcano	false positive		should not have grabbed "volcano"
956	Benthic foraminifera	false positive		should not have grabbed benthic
956	For foraminifera	false positive		should not have grabbed for
313	T. hudsonicus form distinct	false positive	and T. hudsonicus form distinct genetic	grabbed too much
186	L. vilgalysii sequence	false positive		grabbing extra words
186	Lepidostroma vilgalysii specimen	false positive		grabbing extra words
252	R. antirhini complex	false positive	within the R. antirhini complex does	interpreted R. antirhini complex as name
192	Haloferax volcanii	false negative		picked up extra word
192	Haloferax volcanii strain	false positive		picked up extra word
202	Chlamydomonas used	false positive		picked up extra word
209	Aedes aegypti strain	false positive		picked up extra word
209	Sclerotinia sclerotiorum strain	false positive		picked up extra word
209	Escherichia coli strain	false positive		picked up extra word
209	C. cinerea strain	false positive		picked up extra word
209	C. cinerea young	false positive		picked up extra word
209	C. elegans larvae	false positive		picked up extra word
209	E. coli strain	false positive		picked up extra word
209	A. aegypti larvae	false positive		picked up extra word
209	A. gossypii strain	false positive		picked up extra word
215	Ostomya lineages	false positive		picked up extra word
215	Anticorbula may	false positive		picked up extra word
215	Selection??????mya arenaria	false positive		picked up extra word
215	Pachydon grade	false positive		picked up extra word
215	Pachydon may	false positive		picked up extra word
215	A. mencheri present	false positive		picked up extra word
182	Mimulus	false negative		picked up the "hybrids"
1310	T. scalpturatum complex	false positive		related to false negative? should not have grabbed "complex"
110	Aulacoseira clade	false positive		used many times in text
110	Navicula clade	false positive		used many times in text
137	Oikopleura genome	false positive		used many times in text

[dimus]

I will check these words if they can be placed in rejection dictionary.

https://github.com/gnames/gnfinder/issues/64

[dimus]

We can regect these as species epithets:

after
alliance
candidate
change
clade
clades
collection
complex
confer
coral
distinct
distribution
eight
endophyte
expanded
fungi
genes
genetic
genome
genotype
grade
haplotype
host-specific
hybrids
isolates
larva
larvae
lineage
lineages
map
origin
sequence
site
specific
specimen
strain
studies
subspecies
taxa
type
types
used

We can regect these as uninomials:

american
asiatic
both
perhaps
benthic
for
selection

These are ambiguous as species, so they can only be figured out on the verification stage.

may
data
hyphae
locus
loci
plus
mate
means
mite
pose
sire
via
versus
volcano
volcanii
young
present