codecov-commenter
commented
1 year ago Codecov Report
Merging #347 (0c6618d) into master (0f61952) will decrease coverage by
0.67%. The diff coverage is41.48%.
@@ Coverage Diff @@
## master #347 +/- ##
==========================================
- Coverage 86.91% 86.23% -0.68%
==========================================
Files 24 24
Lines 3178 3219 +41
==========================================
+ Hits 2762 2776 +14
- Misses 416 443 +27 | Impacted Files | Coverage Δ | |
|---|---|---|
| R/bambu-processReads_utilityCreateJunctionTables.R | 90.97% <0.00%> (-0.69%) |
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| R/bambu-quantify_utilityFunctions.R | 91.58% <0.00%> (ø) |
|
| R/bambu-processReads.R | 68.46% <22.72%> (-6.98%) |
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| R/bambu-processReads_scoreReadClasses.R | 59.50% <27.77%> (-2.00%) |
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| R/bambu_utilityFunctions.R | 68.88% <50.00%> (+0.23%) |
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| R/bambu-extendAnnotations-utilityExtend.R | 84.78% <72.72%> (-0.45%) |
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| R/bambu-processReads_utilityConstructReadClasses.R | 92.70% <75.00%> (-0.22%) |
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| R/bambu.R | 78.00% <100.00%> (+0.91%) |
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Covers severel niche crashes Bambu can encounter when certain read types are missing
Updates the warning system so warnings are output as they arise during verbose mode