search

GoekeLab / bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data
GNU General Public License v3.0
189 stars 24 forks source link

Issue with `writeBambuOutput` #353

Closed paulimer closed 1 year ago

paulimer commented 1 year ago

Hi all, With the test code of the README, followed by the line

writeBambuOutput(se, "path/to/out_dir")

produces the error 

Error in `left_join()`:
! `...` must be empty.
✖ Problematic argument:
• all = TRUE

which seems to be produced by this line. From what I've seen the all = TRUE argument is a valid dplyr::left_join argument. Perhaps it was the case in a previous dplyr version? Thanks in advance!

gabee-chan commented 1 year ago

I'm also having this problem. :( Does anyone know a solution to get the writeBambuOutput() outputs?

cying111 commented 1 year ago

Hi @paulimer @gabee-chan , thanks for pointing this problem out! It turns out this error was related to the update of package dplyr, there are two solutions to this: 1) use the older version of dplyr 2) use the bug fix branch for now

While we are updating the release branch, please do try out the solutions and let us know if the error persists.

I will also come back again to this issue once we have updated the release branch

cying111 commented 1 year ago

Hi here, the bug is now fixed in the release branch, I will close this issue now. Thank you!