Definition/threshold for full-length counts reported by Bambu

GoekeLab / bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

GNU General Public License v3.0

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Closed bernardo-heberle closed 1 year ago

bernardo-heberle commented 1 year ago

Hi,

I could not find a definition for what Bambu reports as a full-length count/read. Is there a specific threshold?

For example:

Full-length count = A read that covers > 95% of a transcript then it is considered full-length.