The following messages appears at the end of a (successful) run of bambu, it's a minor warning from dplyr:
...
--- Start extending annotations ---
Using a novel discovery rate (NDR) of: 0.063
--- Start isoform quantification ---
--- Finished running Bambu ---
Warning messages:
1: There was 1 warning in `summarise()`.
ℹ In argument: `intersectWidth = max(intersectWidth)`.
Caused by warning in `max()`:
! no non-missing arguments to max; returning -Inf
2: Returning more (or less) than 1 row per `summarise()` group was deprecated in dplyr 1.1.0.
ℹ Please use `reframe()` instead.
ℹ When switching from `summarise()` to `reframe()`, remember that `reframe()` always returns an ungrouped data frame and adjust accordingly.
ℹ The deprecated feature was likely used in the bambu package.
Please report the issue to the authors.
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
3: There was 1 warning in `summarise()`.
ℹ In argument: `intersectWidth = max(intersectWidth)`.
Caused by warning in `max()`:
! no non-missing arguments to max; returning -Inf
This is with R 4.3.2 and Bioc 3.18 / bambu (3.4.0)
The following messages appears at the end of a (successful) run of bambu, it's a minor warning from dplyr:
This is with R 4.3.2 and Bioc 3.18 / bambu (3.4.0)