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GoekeLab / bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data
GNU General Public License v3.0
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mouse data #424

Open mocherry opened 7 months ago

mocherry commented 7 months ago

Dear all,

if I have data from experiments with mouse tissues, can I use the human model or do I have to train a mouse model. Alternatively, is there a mouse model which would be better than the human one. I have not worked with Bambu yet, but would like to know beforehand.

Thanks and best, Matthias

andredsim commented 7 months ago

Hi Matthias,

In most typical use cases you do not need to worry about the model being used as it should train on the data you provide it. To answer you question directly, for advanced use cases where you either want to use the default model or supply your own model we found that a model trained on human data works well on mouse data.

Kind Regards, Andre Sim