Open zhangkn3 opened 1 month ago
Hi Kenan,
Sorry for the late response. The exon number is the the index of the exon within that particular transcript from 1 to n (n is the number of exons). There would be a problem is the same transcript id had multiple of the same exon number but I cannot seem to see that in the example unless I have overlooked it.
Let me know if this has cleared it up, or if I misunderstood the issue.
Kind Regards, Andre Sim
Hi Andre, Thanks for your great contribution to the Bambu pipeline. I am running it to identify novel transcripts from long-read sequencing data.
However, I found multiple entries with the same exon_number for a given transcript_id in the gtf output.
This is one of them. How should I understand the output?![image](https://github.com/GoekeLab/bambu/assets/61104162/11fe297b-474d-4c0e-8e6d-a0d350b4f20a)
Looking forward to hearing from you!
Best, Kenan