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GoekeLab / bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers
MIT License
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Update to proof-of-principle Galaxy workflow #10

Closed mvdbeek closed 2 years ago

mvdbeek commented 2 years ago

This is essentially @lwratten's workflow, I've only updated Salmon to version 1.5.1 and used a dataset collection as the input.

I've uploaded the workflow to Dockstore, which is where we will encourage our users to submit their best-practice workflows to. Users can import the workflow from there into their favorite Galaxy server.

jonathangoeke commented 2 years ago

Hi @mvdbeek I have merged the pull request. If you would like to make any changes you can also just open a new pull request then. Thanks again for this contribution!

mvdbeek commented 2 years ago

Thanks @jonathangoeke, I was planning to rework the documentation on collection upload, I'll update the readme here when done!

jonathangoeke commented 2 years ago

Thanks! That might be helpful for first time users! I am about to add you to the acknowledgments on the repository in the meantime (#13)