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GoekeLab / bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers
MIT License
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Implement SciPipe example workflow #11

Closed samuell closed 2 years ago

samuell commented 2 years ago

This PR implements an example workflow in SciPipe.

As not being an expert in RNA-Seq, I haven't been able to double-check the results, but the workflow completes successfully and is modeled closely after the Nextflow example.

samuell commented 2 years ago

Just a suggestion more than a requirement, what about adding a GitHub action to run it. Other than testing it's useful to show to install and run it

Thanks Paolo, good point! Just saw about the GH workflow defs yesterday. Will make a try! :+1:

samuell commented 2 years ago

Just a suggestion more than a requirement, what about adding a GitHub action to run it. Other than testing it's useful to show to install and run it

Thanks Paolo, good point! Just saw about the GH workflow defs yesterday. Will make a try!

Done.

pditommaso commented 2 years ago

Thanks! Leave to @jonathangoeke to merge this.