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GoekeLab / m6anet

Detection of m6A from direct RNA-Seq data
https://m6anet.readthedocs.io/
MIT License
101 stars 17 forks source link

pip install error for m6anet==2.0.1 #101

Closed Stakaitis closed 1 year ago

Stakaitis commented 1 year ago

An error occurs when trying to install the lates version of m6Anet pip install m6anet==2.0.1

Error:

ERROR: Could not find a version that satisfies the requirement torch==1.6.0 (from m6anet) (from versions: 1.7.1, 1.8.0, 1.8.1, 1.9.0, 1.9.1, 1.10.0, 1.10.1, 1.10.2, 1.11.0, 1.12.0, 1.12.1, 1.13.0, 1.13.1, 2.0.0) ERROR: No matching distribution found for torch==1.6.0

Stakaitis commented 1 year ago

The problem was the python version in my environment:

python-3.9.16-h2782a2a_0_cpython

The required Torch version 1.6.0 does not have a support for Python 3.9. It only supports Python from 3.6 to 3.8, which can be seen when searching for torch-1.6.0 in the provided link, and noticing the python version abbreviation in the .whl name: cp36, cp37, cp38

This installation issue can be resolved by creating a new conda environment with a python 3.8 and installing m6Anet through pip:

conda create --name m6anet python=3.8 conda activate m6anet pip install m6anet==2.0.1

Probably, the installation instructions should be edited

chrishendra93 commented 1 year ago

hi @Stakaitis , thanks for reporting this. There was a problem when I tried to run m6anet on the newer version of torch, that is why I specify the torch version to 1.6.0 which works out just fine for m6anet. I will look into this and hopefully with the new release, we can support newer python version