mod_ratio availability in data.indiv_proba.csv

[sunsetyerin]

I realized that, unlike data.site_proba.csv, data.indiv_proba.csv doesn't include mod_ratio result. I wonder if mod_ratio can be supported in the data.site_proba.csv result. How can I get m6A methylation level from data.indiv_proba.csv?

[chrishendra93]

hi @sunsetyerin ,

data.indiv_proba.csv does not contain mod ratio since each row describes read level probability score. So if you need an estimate for how likely each read to be modified, the probability_modified column in data.indiv_proba.csv will tell you that. The mod ratio in data.site_proba.csv is derived by thresholding the read probability score and calculating the number of reads that are modified from each site