change the number of read count

GoekeLab / m6anet

Detection of m6A from direct RNA-Seq data

https://m6anet.readthedocs.io/

MIT License

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change the number of read count #13

Closed Lqh09 closed 2 years ago

Lqh09 commented 3 years ago

Hi, how to change the minimum read count when running m6anet-run_inference? Thanks!

Lqh09 commented 3 years ago

I want to decrease the number of supporting reads to find more m6A modified sites.

chrishendra93 commented 3 years ago

hi @Lqh09, currently I haven't implemented the functionality to do this. You can probably adjust the model file itself in pooling_blocks.py but I do not recommend this since we probably have to retrain the model