Open mumdark opened 9 months ago
It appears there was an issue when running m6anet dataprep
for data preparation, which might have resulted in the unexpected final output.
How to solve this problem? Thanks.
I am having the same issue
Hello, I also am encountering this problem. I checked my .json file and it is fine, I have 14 positions which I know should be picked up (and were on a different fast5 file of the same exact experiment), but in my output I only have 13. I have ~2k reads coverage per position, and ~800 reads at least for each position in dataprep output.
Any idea of what might be happening?
Thanks!
Dear Developer,
Thank you for developing such an great tool !
I have a question when running
m6anet inference
.Why are there only a few positions, specifically 16, retained in the output? In my data, there are far more positions with more than 20 reads.
Here are the read counts for my input data(a total of 1,117 positions with more than 20 reads):
Here are my results:
Here's my code:
Thank you for your response! Much appreciated.
mumdark