search

GoekeLab / m6anet

Detection of m6A from direct RNA-Seq data
https://m6anet.readthedocs.io/
MIT License
103 stars 19 forks source link

NUM_NEIGHBORING_FEATURES #14

Closed al3xMlt closed 2 years ago

al3xMlt commented 3 years ago

Hey Christoph, Thanks a lot for the tool. have you played around using different NUM_NEIGHBORING_FEATURES for extracting during dataprep? Are they interesting results?

Best

-Alex

chrishendra93 commented 2 years ago

hi @al3xMlt ,

I have played around with different NUM_NEIGHBORING_FEATURES and found that 1 neighboring feature gives the best performance for m6Anet so far. This information will be available on the pre-print which hopefully will be out in the next week or two

Thanks!

Regards

Christopher Hendra

al3xMlt commented 2 years ago

Hey Christopher, As I am currently writing my master's thesis and using your tool, I am really looking forward to reading the preprint. I would still be very happy if you could find the time to answer a few questions that I still need for my thesis. Would be really cool if we can discuss this further by email maybe?

Regards Alex

chrishendra93 commented 2 years ago

Hi @al3xMlt ,

Yes sure, we can discuss this further by email!

al3xMlt commented 2 years ago

Maybe you can just drop your mail or give me a short text on: alexander.malt@mdc-berlin.de