yet another error with m6anet dataprep

[mocherry]

Dear all, now I get another error when running m6anet dataprep:

File "pandas_libs\lib.pyx", line 2280, in pandas._libs.lib.maybe_convert_numeric ValueError: Unable to parse string "NNNNN"

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\Users\kirsch\AppData\Local\miniconda3\envs\m6anet\Scripts\m6anet-script.py", line 9, in sys.exit(main()) File "C:\Users\kirsch\AppData\Local\miniconda3\envs\m6anet\lib\site-packages\m6anet__init__.py", line 30, in main args.func(args) File "C:\Users\kirsch\AppData\Local\miniconda3\envs\m6anet\lib\site-packages\m6anet\scripts\dataprep.py", line 68, in main parallel_preprocess_tx(args.eventalign, args.out_dir, args.n_processes, File "C:\Users\kirsch\AppData\Local\miniconda3\envs\m6anet\lib\site-packages\m6anet\utils\dataprep_utils.py", line 383, in parallel_preprocess_tx data = combine(events_str) File "C:\Users\kirsch\AppData\Local\miniconda3\envs\m6anet\lib\site-packages\m6anet\utils\dataprep_utils.py", line 297, in combine eventalign_result.loc[:, 'sum_dwell_time'] = pd.to_numeric(eventalign_result['event_length']) \ File "C:\Users\kirsch\AppData\Local\miniconda3\envs\m6anet\lib\site-packages\pandas\core\tools\numeric.py", line 217, in to_numeric values, new_mask = lib.maybe_convert_numeric( # type: ignore[call-overload] # noqa File "pandas_libs\lib.pyx", line 2322, in pandas._libs.lib.maybe_convert_numeric ValueError: Unable to parse string "NNNNN" at position 0

As always, help would be appreciated. Best, Matthias

[yuukiiwa]

Hi Matthias (@mocherry),

I think it is specific to pandas' problem in windows.

Thanks!

Best wishes, Yuk Kei