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GoekeLab / m6anet

Detection of m6A from direct RNA-Seq data
https://m6anet.readthedocs.io/
MIT License
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f5c or nanopolish #169

Closed JSluo888 closed 1 week ago

JSluo888 commented 1 month ago

Should we use f5c or nanopolish for indexing and eventalign, if our reads are RNA002?

ritianjiang commented 1 month ago

I guess you can use the nanopolish and the older release of m6anet like v2.0.0

JSluo888 commented 1 month ago

I guess you can use the nanopolish and the older release of m6anet like v2.0.0

Do you think the current m6anet version would not support RNA002 reads?

ritianjiang commented 1 month ago

I guess you can use the nanopolish and the older release of m6anet like v2.0.0

Do you think the current m6anet version would not support RNA002 reads?

No. 😂I ignored that authors have provided both RNA002 model and RNA004 model in 2.1.0

yuukiiwa commented 1 week ago

Hi @JSluo888,

Either nanopolish or f5c should work.

Thanks!

Best wishes, Yuk Kei