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GoekeLab / m6anet

Detection of m6A from direct RNA-Seq data
https://m6anet.readthedocs.io/
MIT License
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output the read level modification probability #47

Closed guowb9 closed 2 years ago

guowb9 commented 2 years ago

Hi, thanks a lot for developing m6anet! I have successfully run my data with m6anet. But I have a question, can I output the read level modification probability for specific sites?

Best wishes.

chrishendra93 commented 2 years ago

hi @guowb9 , yes if you are using m6anet 1.2 you can output the read level modification probability for specific sites using the flag --infer_mod_rate

guowb9 commented 2 years ago

Great, thanks a lot for your reply!

haotianteng commented 1 year ago

Where to find the read level probability? I found there is a data.json file, and every line contains a N-by-9 matrix, how to interpret this matrix?

Best