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GoekeLab / m6anet

Detection of m6A from direct RNA-Seq data
https://m6anet.readthedocs.io/
MIT License
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how to train model on all middle A 5-mer motif #55

Closed JeremyQuo closed 1 year ago

JeremyQuo commented 1 year ago

I wanna extract all middle A features and train a new model . Is there any more pipeline ?

chrishendra93 commented 1 year ago

hi @JeremyQuo , currently we do not support any feature to train a new model with different 5-mer motifs. Regardless, you can adapt our code to do this by modifying the ALL_KMERS constant variable in m6anet/constants.py