Rewrite function getReducedExonRanges - use dplyr::summarise instead of lapply to collapse overlapping exon ranges - output is the same as replaced version
No need to parallelize
Calculation of Promoter Rank
Remove helper function getIntronRank
Rewrite function getIntronRanks - use dplyr instead of lapply - output is a vector instead of a list
Small modification to annotateAllIntronRanges to accommodate change in output type
Restructure annotation-data.R
Avoid re-computation of certain values in different helper functions
Single function for preparing promoter annotation : preparePromoterAnnotation
Remove unused argument transcriptRanges from getFirstExonRanges
reduceExonsByGenegetReducedExonRanges- usedplyr::summariseinstead oflapplyto collapse overlapping exon ranges - output is the same as replaced versiongetIntronRankgetIntronRanks- usedplyrinstead oflapply- output is a vector instead of a listannotateAllIntronRangesto accommodate change in output typeannotation-data.RpreparePromoterAnnotationtranscriptRangesfromgetFirstExonRanges